PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g065570.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YB
Protein Properties Length: 189aa    MW: 21251.4 Da    PI: 8.3612
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g065570.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB83.82.1e-2618103693
               NF-YB   6 rflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                           lP+a v+rim+ +lP+naki +++ke++q+ vs +i  +t++a ++   e+rkt++++d+lwa+ ++G+  ++  l +yl++yre 
  Solyc07g065570.1.1  18 VQLPMASVTRIMRGILPTNAKINDESKESMQKLVSYYINRITKKAMERM--ERRKTVTTEDILWAMINMGLTIHAGLLAQYLSRYREY 103
                         579********************************************85..88*********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.0E-2517104IPR009072Histone-fold
SuperFamilySSF471131.53E-2018105IPR009072Histone-fold
PfamPF008084.7E-161981IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MTNVNTGVDQ LAQRLLEVQL PMASVTRIMR GILPTNAKIN DESKESMQKL VSYYINRITK  60
KAMERMERRK TVTTEDILWA MINMGLTIHA GLLAQYLSRY REYNPVSYYN VRKPNCELNV  120
NPLAASHPNE PVPGYPYPYF PPNMLFYDPV TTTLVTSRDF EMATGNDGSP SEASTSTVMP  180
AYPFGQLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_B5e-2120102892Transcription factor HapC (Eurofung)
4g91_B5e-2120102892Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2103450.0Solanum lycopersicum chromosome 7 clone C07HBa0001N06, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010324257.11e-138PREDICTED: nuclear transcription factor Y subunit B-2-like isoform X1
SwissprotQ84W665e-24NFYB6_ARATH; Nuclear transcription factor Y subunit B-6
TrEMBLK4CHN51e-138K4CHN5_SOLLC; Uncharacterized protein
STRINGSolyc07g065570.1.11e-138(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14746510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.22e-25nuclear factor Y, subunit B6
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]